Welcome to the MASTR server
Multiple Alignment of STructural RNAs
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The source code for MASTR as well as datasets etc. used in the paper are available for download.
Regarding compilation (on UNIX systems): You need the Vienna package to use MASTR since we include RNAfold to calculate the probability matrices. You should therefore obtain the latest version from their homepage. You can then compile MASTR.cc e.g. by using the included Makefile. Note, however, that you will need to edit the Makefile to get this to work: The INCLUDE and LIBS variables are set to the system where MASTR was developed and they have to point to your installation of the Vienna package. Having made these simple changes, you just type make.