CDS output


DESCRIPTION

Collection of the predicted CDSs for the chosen genome. In the description line an "R" indicates the reverse strand. For a direct strand CDS the last two numbers in the description line are the positions for the first base in the start codon and the last base in the stop codon, respectively. For a reverse strand CDS the last two numbers in the description line are the positions for the last base in the stop codon and the first base in the start codon, respectively. Note that these numbers are given in direct strand coordinates, while the corresponding sequence is taken from the reverse strand.



EXAMPLE OUTPUT

############# Predicted CDSs ##############

 
>gi|14600379|ref|NC_000854.1|2270-2836
TTGGCGGTAGAGCAATTAACGATTGCTGGAAGCGAGCTACTAAAACATGAGCTAACAAGCAAGCTAGTTA
TCGGCGTATTATTGTCCGTTTGGATAGTCATAGTTGCAGTCATCAAGCTCAGGAAGTACTCGAGGAATAG
GCAGATAGTCGGTCTAATTGTAGCGGCTGTAGCCACAGTCGTGGTCTTAGGTACAATAGCCTATATATTT
AACCCGCTCCAAACCTATGGCGCTTATCTCGAGAGTAGAACATTACAAATTAGATTCTACATGAATGATG
AAGTGGCTGTTGACTTATGTAACGCTCAGTTGTCATTGCTATCGAGGAGCAACGCAATAAACTTACTCTA
CATTAGAACTAACGGTATTGCTGATCCTTTCTCAGGTATTACTGCGGGATATTACAAAACTGTGGATGAA
CGGGAAGCCTATGTACTTATCGCTGGTAAGGACATTGATGATGTCCTTGCAATCGAATTCGACAGTAAAA
TTATCCTCCTAGGACTTAAAGGAGCGAATGACTTTTACCAAAAACTCATAATTTACAAAAGTAGTAATTG
TAGATAG
.
.
>gi|14600379|ref|NC_000854.1|R-213-959
TTGCAGAAAGGGGAGAGAGTAATGGTAGATATACTATCTTCACTCCTGCTGTCGCTTCCATTTGGTGTAA
TTGGATTTCTCTTGGTATTGTCTCCTGGGTCAATATGGACGCCTGTAAAGGAGAGCATAGGCTATGTTTA
TGTTTCTAGGCGCGTCACGGTTAAAGCGAGCAAGCTATTGGGTTCGCTTACTTTGTTAGCGAGTTTAATA
TCTTTTGTGGTTGGTGCAGCATATGGTATTACTATTCAGGCATCTACACTAGCCCTATTACTTGCATTGA
TAACCGTAGTTACCGTGGAATATTCTATGAGGCTCGCCGAAATAGAGTCTTTAAACCAACCAGTCCTTGA
AGGATTCGAGCCAGTAGGTTCTATTAAATTAAAATATTTGACTATTATATTACTAGTTTATCTAATCTCG
ATTGTATTCTCAATTGAAGGTTCTCTTAAACTATATAGTATTGGTGCATACGGAACGTTAGCTTCACATT
TATCTATTGAAATATTAGCAGGATATACCGTTTTTCTATCTGTAAAAAGGCCGGAAGCATATGTAATACC
AGGACTAAGTCGGGAAACGATCGAGCTATTACAATTTTTCATGCCAACCTCCTTATCTCTCATAGCTATA
GGTGTATATATGATTTTAGCAGGATTCCATATGTGGTGGATAATCCTGTTGGCGGGAGTGACCACTCTAT
TCGTTGTAACAATGTTAATTATGATTAATAAAGAGGGTAAGTATTGA

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