EasyGene 1.2 - Prokaryotic gene prediction


EasyGene 1.2 produces a list of predicted genes for a chosen prokaryotic genome. Each prediction is attributed with a significance score (R-value) indicating how likely it is to be just a  non-coding open reading frame rather than a real gene. The user needs only to specify the output format for the particular genome. The R-value cutoff has a default value which may be altered if needed.
The various output formats and features, which can be displayed, are explained in their corresponding links.


For publication of results, please cite:
EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance.
Thomas Schou Larsen and Anders Krogh.
BMC Bioinformatics 2003, 4:21
Large-scale prokaryotic gene prediction and comparison to genome annotation.
P. Nielsen and A. Krogh.
Bioinformatics 2005, 21:4322-4329

Statistics for the genomes

EasyGene 1.0 server

Genome

Format:
Narrow HTML
HTML
GFF
CDS

Features:
CDS
ORF
ALT

  Limitations:

R cutoff:


Range: (optional)
From:
To:

Strand:
+:
-:

Lines per page:


GETTING HELP

Scientific problems: Pernille Nielsen       Technical problems: